RetrogeneDB ID: | retro_pabe_2983 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:98065926..98066507(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLK |
.FSSSAKIVKPN.EKPDEF.SGISQALLELEM.SDL.AQLRELNITAAKE.EVG.GRKAIIIFVP.P.LK | |
Retrocopy | IFSSSAKIVKPNDEKPDEFKSGISQALLELEMISDLNAQLRELNITAAKETEVGSGRKAIIIFVPAPKLK |
Parental | SFQKIQVRLVR-ELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEI |
SFQKIQV.LV..ELEKKFSGKHVVFI.QRRILPKPT.KS.TKNKQK.PRSR.LTAV.DAILEDLVFPSEI | |
Retrocopy | SFQKIQVQLVA<ELEKKFSGKHVVFITQRRILPKPT*KSCTKNKQKHPRSRALTAVQDAILEDLVFPSEI |
Parental | VGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
VGKRI..KLDG..L.KVHL.KAQQNNVEH.V..FSGVYKKLTGKDVNFE.PEF.L | |
Retrocopy | VGKRICMKLDGGLLVKVHLYKAQQNNVEHEVKIFSGVYKKLTGKDVNFELPEFRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .03 RPM |
SRP007412_cerebellum | 0 .00 RPM | 39 .52 RPM |
SRP007412_heart | 0 .00 RPM | 36 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 59 .47 RPM |
SRP007412_liver | 0 .00 RPM | 62 .52 RPM |