Parental gene:

ENSPPYG00000025872

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:2a:109256949..109262765(-)


>ENSPPYG00000025872
ATGTTCAGTTCGAGCGCCAAGATCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGCATCTCCCAGGCTCT
TCTGGAACTGGAGATGAACTCGGACCTCAAGGCTCAGCTCAGAGAGCTGAATATTACGGCAGCCAAGGAAATTGAAGTTG
GTGGTGGTCGGAAAGCTATCATAATCTTTGTTCCCGTTCCTCAACTGAAATCTTTCCAGAAAATCCAAGTCCGGCTAGTA
CGCGAATTGGAGAAAAAGTTCAGTGGGAAGCATGTCGTCTTTATCGCTCAGAGGAGAATTCTGCCTAAGCCAACTCGAAA
AAGCCGTACAAAAAATAAGCAAAAGCGTCCCAGGAGCCGGACTCTGACAGCTGTGCACGATGCCATCCTTGAGGACTTGG
TCTTCCCAAGCGAAATTGTGGGCAAGAGAATCCGCGTCAAACTGGATGGCAGCCGACTCATAAAGGTTCATTTGGACAAA
GCACAGCAGAACAATGTGGAACACAAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTTACGGGCAAGGATGTTAATTT
TGAATTCCCAGAGTTTCAATTGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 28 .03 RPM
SRP007412_cerebellum 39 .52 RPM
SRP007412_heart 36 .49 RPM
SRP007412_kidney 59 .47 RPM
SRP007412_liver 62 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016224 ortholog_one2one 5 retrogenes
retro_btau_1016, retro_btau_1046, retro_btau_1351, retro_btau_448, retro_btau_997,
Canis familiaris ENSCAFG00000003263 ortholog_one2one 1 retrogene
retro_cfam_1798,
Callithrix jacchus ENSCJAG00000016462 possible_ortholog 2 retrogenes
retro_cjac_16, retro_cjac_2287,
Cavia porcellus ENSCPOG00000009795 ortholog_one2one 2 retrogenes
retro_cpor_1139, retro_cpor_773,
Dasypus novemcinctus ENSDNOG00000013285 possible_ortholog 14 retrogenes
retro_dnov_1091, retro_dnov_1351, retro_dnov_1388, retro_dnov_1459, retro_dnov_1688, retro_dnov_1849, retro_dnov_1940, retro_dnov_1970, retro_dnov_238, retro_dnov_2409, retro_dnov_558, retro_dnov_582, retro_dnov_623, retro_dnov_791,
Equus caballus ENSECAG00000020253 possible_ortholog 2 retrogenes
retro_ecab_276, retro_ecab_396,
Felis catus ENSFCAG00000023243 possible_ortholog 2 retrogenes
retro_fcat_1534, retro_fcat_41,
Homo sapiens ENSG00000171863 possible_ortholog 14 retrogenes
retro_hsap_111, retro_hsap_112, retro_hsap_1242, retro_hsap_1737, retro_hsap_1837, retro_hsap_2907, retro_hsap_2925, retro_hsap_329, retro_hsap_3635, retro_hsap_404, retro_hsap_4711, retro_hsap_4760, retro_hsap_528, retro_hsap_703,
Gorilla gorilla ENSGGOG00000023095 possible_ortholog 13 retrogenes
retro_ggor_2028, retro_ggor_2090, retro_ggor_2161, retro_ggor_218, retro_ggor_2452, retro_ggor_2927, retro_ggor_294, retro_ggor_2965, retro_ggor_3047, retro_ggor_346, retro_ggor_400, retro_ggor_484, retro_ggor_597,
Loxodonta africana ENSLAFG00000015087 possible_ortholog 11 retrogenes
retro_lafr_1223, retro_lafr_160, retro_lafr_217, retro_lafr_318, retro_lafr_319, retro_lafr_413, retro_lafr_514, retro_lafr_720, retro_lafr_786, retro_lafr_964, retro_lafr_970,
Myotis lucifugus ENSMLUG00000006121 possible_ortholog 1 retrogene
retro_mluc_1118,
Monodelphis domestica ENSMODG00000014495 possible_ortholog 2 retrogenes
retro_mdom_662, retro_mdom_810,
Mus musculus ENSMUSG00000061477 ortholog_one2one 2 retrogenes
retro_mmus_271, retro_mmus_53,
Nomascus leucogenys ENSNLEG00000015407 possible_ortholog 10 retrogenes
retro_nleu_1505, retro_nleu_1771, retro_nleu_1783, retro_nleu_2278, retro_nleu_2346, retro_nleu_2510, retro_nleu_2892, retro_nleu_3080, retro_nleu_817, retro_nleu_835,
Oryctolagus cuniculus ENSOCUG00000008507 ortholog_one2one 2 retrogenes
retro_ocun_203, retro_ocun_230,
Otolemur garnettii ENSOGAG00000028165 possible_ortholog 1 retrogene
retro_ogar_133,
Ochotona princeps ENSOPRG00000005085 possible_ortholog 3 retrogenes
retro_opri_1036, retro_opri_415, retro_opri_500,
Pan troglodytes ENSPTRG00000011615 possible_ortholog 3 retrogenes
retro_ptro_202, retro_ptro_3132, retro_ptro_58,
Pteropus vampyrus ENSPVAG00000002071 possible_ortholog 7 retrogenes
retro_pvam_1051, retro_pvam_1183, retro_pvam_1330, retro_pvam_1437, retro_pvam_207, retro_pvam_543, retro_pvam_887,
Rattus norvegicus ENSRNOG00000008551 ortholog_one2many 2 retrogenes
retro_rnor_39, retro_rnor_391,
Ictidomys tridecemlineatus ENSSTOG00000024830 possible_ortholog 3 retrogenes
retro_itri_1147, retro_itri_1161, retro_itri_1215,
Tursiops truncatus ENSTTRG00000001616 possible_ortholog 6 retrogenes
retro_ttru_1422, retro_ttru_1659, retro_ttru_1706, retro_ttru_301, retro_ttru_323, retro_ttru_773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_31 97.42 100.00
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2. retro_pabe_313 95.90 100.00
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3. retro_pabe_360 82.38 98.45
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4. retro_pabe_499 70.59 69.59
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5. retro_pabe_524 77.66 100.00
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6. retro_pabe_1033 97.94 100.00
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7. retro_pabe_1555 97.46 100.00
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8. retro_pabe_2506 76.68 97.42
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9. retro_pabe_2982 85.86 97.42
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10. retro_pabe_2983 85.13 100.00
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11. retro_pabe_3659 87.27 55.67
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12. retro_pabe_3803 94.33 72.16
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Download FASTA sequences of all ENSPPYG00000025872 retrocopies