RetrogeneDB ID: | retro_hsap_3879 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:98015108..98015612(-) | ||
Located in intron of: | ENSG00000006453 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000214389 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSG00000145425 | ||
Aliases: | RPS3A, FTE1, MFTL, S3A | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 98.81 % |
Parental protein coverage: | 74.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
L.NFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK | |
Retrocopy | LPNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
Parental | KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS |
KM.EIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS | |
Retrocopy | KMIEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS |
Parental | SSGKATGDETGAKVERADGYEPPVQESV |
SSGKATGDETGAKVERADGYEPPVQESV | |
Retrocopy | SSGKATGDETGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .46 RPM | 165 .82 RPM |
bodymap2_adrenal | 1 .06 RPM | 364 .03 RPM |
bodymap2_brain | 0 .23 RPM | 75 .31 RPM |
bodymap2_breast | 0 .68 RPM | 171 .42 RPM |
bodymap2_colon | 0 .83 RPM | 412 .69 RPM |
bodymap2_heart | 0 .20 RPM | 106 .78 RPM |
bodymap2_kidney | 0 .66 RPM | 159 .90 RPM |
bodymap2_liver | 0 .21 RPM | 109 .78 RPM |
bodymap2_lung | 0 .37 RPM | 488 .03 RPM |
bodymap2_lymph_node | 1 .01 RPM | 443 .21 RPM |
bodymap2_ovary | 1 .18 RPM | 526 .47 RPM |
bodymap2_prostate | 2 .29 RPM | 540 .27 RPM |
bodymap2_skeletal_muscle | 0 .38 RPM | 86 .34 RPM |
bodymap2_testis | 0 .43 RPM | 259 .98 RPM |
bodymap2_thyroid | 0 .85 RPM | 233 .87 RPM |
bodymap2_white_blood_cells | 1 .93 RPM | 665 .11 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_178734 | 304 libraries | 513 libraries | 948 libraries | 53 libraries | 11 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 3 .12 RPM |
CEU_NA11843 | 4 .92 RPM |
CEU_NA11930 | 5 .87 RPM |
CEU_NA12004 | 1 .79 RPM |
CEU_NA12400 | 2 .95 RPM |
CEU_NA12751 | 1 .75 RPM |
CEU_NA12760 | 4 .36 RPM |
CEU_NA12827 | 4 .91 RPM |
CEU_NA12872 | 2 .67 RPM |
CEU_NA12873 | 3 .38 RPM |
FIN_HG00183 | 4 .23 RPM |
FIN_HG00277 | 4 .36 RPM |
FIN_HG00315 | 1 .93 RPM |
FIN_HG00321 | 2 .33 RPM |
FIN_HG00328 | 1 .80 RPM |
FIN_HG00338 | 2 .94 RPM |
FIN_HG00349 | 4 .84 RPM |
FIN_HG00375 | 2 .84 RPM |
FIN_HG00377 | 2 .17 RPM |
FIN_HG00378 | 2 .21 RPM |
GBR_HG00099 | 2 .56 RPM |
GBR_HG00111 | 2 .30 RPM |
GBR_HG00114 | 2 .08 RPM |
GBR_HG00119 | 2 .54 RPM |
GBR_HG00131 | 2 .16 RPM |
GBR_HG00133 | 2 .34 RPM |
GBR_HG00134 | 2 .29 RPM |
GBR_HG00137 | 3 .24 RPM |
GBR_HG00142 | 2 .75 RPM |
GBR_HG00143 | 2 .23 RPM |
TSI_NA20512 | 3 .39 RPM |
TSI_NA20513 | 1 .96 RPM |
TSI_NA20518 | 4 .14 RPM |
TSI_NA20532 | 3 .61 RPM |
TSI_NA20538 | 3 .04 RPM |
TSI_NA20756 | 3 .87 RPM |
TSI_NA20765 | 1 .45 RPM |
TSI_NA20771 | 3 .52 RPM |
TSI_NA20786 | 1 .96 RPM |
TSI_NA20798 | 2 .28 RPM |
YRI_NA18870 | 3 .69 RPM |
YRI_NA18907 | 1 .63 RPM |
YRI_NA18916 | 1 .83 RPM |
YRI_NA19093 | 2 .34 RPM |
YRI_NA19099 | 2 .26 RPM |
YRI_NA19114 | 2 .07 RPM |
YRI_NA19118 | 3 .40 RPM |
YRI_NA19213 | 1 .34 RPM |
YRI_NA19214 | 1 .48 RPM |
YRI_NA19223 | 2 .19 RPM |