RetrogeneDB ID: | retro_tbel_3832 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_18961:781..1570(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000011442 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 91.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGK-KGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
MA.GKNKRL.KG.K.KGAKKKV.DPFSKKDW.DVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKG.VFEV | |
Retrocopy | MAAGKNKRLMKGFK<KGAKKKVVDPFSKKDWNDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGHVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SLADLQND.VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMV.KWQTMIEAHVDVKTTDGYLL.LFC | |
Retrocopy | SLADLQNDKVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVEKWQTMIEAHVDVKTTDGYLLCLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSI-GKDIEKACQSIYPLH |
VGFTKKR.NQI.KTSYAQH.QV.QI.KK.ME..TREVQTNDLKEV.NKLIPDSI.GK..EKACQSIYPLH | |
Retrocopy | VGFTKKRSNQILKTSYAQHYQVHQIQKKVMETRTREVQTNDLKEVFNKLIPDSI>GKT-EKACQSIYPLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEP.VQESV | |
Retrocopy | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPLVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |