RetrogeneDB ID: | retro_tbel_1421 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4661:217141..217736(+) | ||
Located in intron of: | ENSTBEG00000008118 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 81.77 % |
Parental protein coverage: | 75.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | VFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLL |
.FEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQ.M.EAHVD.KTT.GYLL | |
Retrocopy | LFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQSMTEAHVDIKTTNGYLL |
Parental | RL-FCVGFTK-KRNNQIRKTS-YAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQ |
.L....G..K.K.NN.I.KTS..A..Q...QI.KKMMEIMT.E.Q.ND..EVVNKL.PDSIGKDIEKACQ | |
Retrocopy | HL<LVMGLLK<KLNNHIWKTS>NAYYQHACQILKKMMEIMTQEEQIND*EEVVNKLTPDSIGKDIEKACQ |
Parental | SIYPLHDVFVRKVKMLK-KPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
SIYPLH.V.VRKVKMLK..PKFELGKLMELHGEGSSSGKA.GDETGAKVE.ADGYEPPVQES. | |
Retrocopy | SIYPLHAVSVRKVKMLK<EPKFELGKLMELHGEGSSSGKAIGDETGAKVE*ADGYEPPVQESI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |