RetrogeneDB ID: | retro_tbel_3947 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_43811:78..870(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 89.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
M.VGKNK.L.KG.KKGAKKKV.DPFSKKDWYDV.APAMFNIRNI.KT.VTRTQGTKIASD..KG.VFEVS | |
Retrocopy | MVVGKNKHLMKGSKKGAKKKVVDPFSKKDWYDVTAPAMFNIRNIKKTPVTRTQGTKIASDSFKGCVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFC |
LADLQNDEV.FRKFKLIT.DVQGKN..TNFH.MDLTRDKMCSMVK.KWQTMIEAHV..KTTDGYLLRLFC | |
Retrocopy | LADLQNDEVPFRKFKLITKDVQGKNPMTNFHSMDLTRDKMCSMVK<KWQTMIEAHVNIKTTDGYLLRLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDI-EKACQSIYPLH |
.GFTKK.NNQIRKTSY.QHQQVRQIRKKMMEIMTREVQTNDLKEVV.KLIPDS.GKDI.EKACQSIY.LH | |
Retrocopy | AGFTKKCNNQIRKTSYVQHQQVRQIRKKMMEIMTREVQTNDLKEVVDKLIPDSTGKDI>EKACQSIYSLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVKMLKKPKFELGKLMELHGEGS.SGKATGD.TGAKVERADGYEPPVQESV | |
Retrocopy | DVFVRKVKMLKKPKFELGKLMELHGEGSCSGKATGDDTGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |