RetrogeneDB ID: | retro_tbel_399 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1945:524974..525471(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 79.07 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
L..FHGMDLT.DKMCSMVK.WQ.M.EAHVDVKTT.GYLL.LFCVGFTK.RNNQIRKTSYAQH.QV.Q.RK | |
Retrocopy | LPDFHGMDLTCDKMCSMVKRWQAMTEAHVDVKTTSGYLLHLFCVGFTKTRNNQIRKTSYAQHWQVGQTRK |
Parental | KMMEIMTR-EVQTNDLKEVVNKLIPDSIG-KDIEKACQSIYPLH-DVFVRKVKMLKKPKFELGKLMELHG |
KMMEIMTR.E.Q.ND.KEV.NKLIPDSIG.K....ACQ.IYPLH..VFVRKV.MLKKP.F.LGKLMELHG | |
Retrocopy | KMMEIMTR<EIQMNDSKEVFNKLIPDSIG<KGANEACQFIYPLH<CVFVRKVEMLKKPEFDLGKLMELHG |
Parental | EGSSSGKATG-DETGAKVERADGYEPPVQESV |
EG.SSGKATG.DE.GA.VERA.G.EPPVQ..V | |
Retrocopy | EG-SSGKATG<DEMGARVERAEGDEPPVQKPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |