RetrogeneDB ID: | retro_tbel_1698 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5512:659884..660415(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 86.59 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | WYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTN |
WYD.KAPAMFNIRNIGKTLVTRTQGTKI.SDGLK..VFEVSLADLQNDEV.FRKFKLITEDVQGK.CLT. | |
Retrocopy | WYDMKAPAMFNIRNIGKTLVTRTQGTKIESDGLKDHVFEVSLADLQNDEVTFRKFKLITEDVQGKHCLTK |
Parental | FHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMM |
FHGMDLTRDKMCS..KKWQT.I.AHVDVKTTDGYLL.LFC.GF.KKRNNQI.KTSYAQHQQV.QIRKKMM | |
Retrocopy | FHGMDLTRDKMCSIIKKWQTVIDAHVDVKTTDGYLLCLFCAGFIKKRNNQIQKTSYAQHQQVHQIRKKMM |
Parental | EIMTREVQT-NDLKEVVNKLIPDS-IGKDIEKAC-QSIY |
EIMTREVQT..DLK.VVNKLIP.S.IGKD.EKAC..SIY | |
Retrocopy | EIMTREVQT>SDLKDVVNKLIPVS>IGKDGEKAC>ESIY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |