RetrogeneDB ID: | retro_tbel_375 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1902:407874..408526(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 88.99 % |
Parental protein coverage: | 82.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGK-NCLTNFHGMDLTRDKMCSMVKK |
LV.RTQGTKI.SD.LKG.VFEVSLADLQND.VAFRKFK.ITE.VQ.K.NCLTNFH.MDLT.DKMCSMVKK | |
Retrocopy | LVSRTQGTKITSDSLKGHVFEVSLADLQNDKVAFRKFKIITEYVQSK>NCLTNFHSMDLTHDKMCSMVKK |
Parental | WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVN |
WQT.IEAHVDVKTTDGYLLRLFC.GFT.K.NNQI.KTSYAQ.QQVRQIRKKMMEIMTREVQTNDLKEVVN | |
Retrocopy | WQTTIEAHVDVKTTDGYLLRLFCFGFT*KCNNQIWKTSYAQYQQVRQIRKKMMEIMTREVQTNDLKEVVN |
Parental | KLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGY |
KLIP.SIGKDIEKACQSIYP.HDVFVRKVKMLKK..FELGKLMELHGE.SSSGKATGDE.GAKVE.ADGY | |
Retrocopy | KLIPVSIGKDIEKACQSIYPIHDVFVRKVKMLKKSRFELGKLMELHGEVSSSGKATGDEMGAKVEQADGY |
Parental | EPPVQESV |
EPPVQESV | |
Retrocopy | EPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |