RetrogeneDB ID: | retro_nleu_758 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397272.1:2509488..2510212(-) | ||
Located in intron of: | ENSNLEG00000003478 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSNLEG00000005815 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 92.05 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLI-TED |
.DPFSKKDWYDVKAPAMF.I...GKTLVTRTQG.KIASDGLKG.VFEVSL.D.Q.DEVAFRKFKLI.TED | |
Retrocopy | LDPFSKKDWYDVKAPAMFGIITMGKTLVTRTQGIKIASDGLKGHVFEVSLTDVQDDEVAFRKFKLI<TED |
Parental | VQGKN-CLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ |
VQGKN.CLTNFHGMDLT.DKMCS.VKK.QTMI..H.DVKTT..YLL.L.CV.FTKK.NN.IRKTSY..H. | |
Retrocopy | VQGKN<CLTNFHGMDLTCDKMCSVVKK*QTMI*VHTDVKTTNDYLLCLSCVDFTKKCNNYIRKTSYN*H* |
Parental | QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLM |
QV.QI.KKMMEIMT.EVQ.N.LKE.VNKLIPDS.GKDIEKAC.SIYPLH.VF.RKVK..KKPKFELGKLM | |
Retrocopy | QVCQIQKKMMEIMTQEVQINNLKEAVNKLIPDSTGKDIEKACLSIYPLHGVFIRKVK-IKKPKFELGKLM |
Parental | ELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
.LHGEGSS..KAT.DE.GAK.E.ADGYEP.V.ESV | |
Retrocopy | *LHGEGSSFEKATKDEKGAKIE*ADGYEPSVHESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |