RetrogeneDB ID: | retro_tbel_3114 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_130659:11838..12278(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 81.7 % |
Parental protein coverage: | 56.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KKWQTMIEAHVDVKTT-DGYLLRLFCVGFTK-KRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLK |
.KWQ.MIEAH....TT.DGYLL.LFC..FTK.K..NQIRK.SYAQHQQVRQ..K.MMEIMT.EVQTND.K | |
Retrocopy | QKWQVMIEAHL-CQTT<DGYLLCLFCAEFTK<KCSNQIRKSSYAQHQQVRQVWK-MMEIMTHEVQTNDFK |
Parental | EVVNKLIPDSIGKDIEKACQSIYPLHDVFVR-KVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVE |
EVVNK.IPDS.GKDIEKACQ.IYPLHDVFVR.K.K.LKKPKFELGKLMELHGEGS.SGKATGDETG.KVE | |
Retrocopy | EVVNKVIPDSTGKDIEKACQFIYPLHDVFVR>KSK-LKKPKFELGKLMELHGEGSCSGKATGDETGTKVE |
Parental | RADGYEPPVQESV |
.ADGYEPPVQESV | |
Retrocopy | *ADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |