RetrogeneDB ID: | retro_hsap_1620 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 16:5320174..5320784(+) | ||
Located in intron of: | ENSG00000260411 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000242278 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSG00000145425 | ||
Aliases: | RPS3A, FTE1, MFTL, S3A | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 82.52 % |
Parental protein coverage: | 77.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKT-LVTRTQGTKIASDGLKGRVFEV |
MAV.KNK.L.KGGKKG.KKK..DPFSKKD.YDVKAPAMFN.RNIGKT.LVTRT.GT.IASDGLKG.VFEV | |
Retrocopy | MAVVKNKCLMKGGKKGVKKKILDPFSKKDQYDVKAPAMFNVRNIGKT<LVTRTRGTQIASDGLKGLVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SLAD.QNDEVAFRKFKLITEDVQG.NCLTNF.GM.LT.DK.CSMV.K..TMIE.HVDVKTTDGY...LFC | |
Retrocopy | SLADVQNDEVAFRKFKLITEDVQGRNCLTNFYGMGLTCDKICSMVEKCSTMIETHVDVKTTDGYFFHLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQ-VRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSI |
VGFTKKRNNQI.KTSYAQHQQ.V.QI.KK..EIMT..VQTNDLKEVVNKLIPD.IGKD.EKACQ.I | |
Retrocopy | VGFTKKRNNQILKTSYAQHQQ<VCQIQKKVLEIMT*DVQTNDLKEVVNKLIPDNIGKDVEKACQFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 165 .82 RPM |
bodymap2_adrenal | 0 .00 RPM | 364 .03 RPM |
bodymap2_brain | 0 .05 RPM | 75 .31 RPM |
bodymap2_breast | 0 .00 RPM | 171 .42 RPM |
bodymap2_colon | 0 .00 RPM | 412 .69 RPM |
bodymap2_heart | 0 .00 RPM | 106 .78 RPM |
bodymap2_kidney | 0 .00 RPM | 159 .90 RPM |
bodymap2_liver | 0 .00 RPM | 109 .78 RPM |
bodymap2_lung | 0 .00 RPM | 488 .03 RPM |
bodymap2_lymph_node | 0 .00 RPM | 443 .21 RPM |
bodymap2_ovary | 0 .02 RPM | 526 .47 RPM |
bodymap2_prostate | 0 .00 RPM | 540 .27 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 86 .34 RPM |
bodymap2_testis | 0 .00 RPM | 259 .98 RPM |
bodymap2_thyroid | 0 .00 RPM | 233 .87 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 665 .11 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |