RetrogeneDB ID: | retro_tbel_2745 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_118053:141150..141756(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 73.79 % |
Parental protein coverage: | 77.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GKNKRLTKGGKK-GAKKKVXDPFSKK-DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSL |
GK.KRL.KGGKK.GAKKK..D.F.KK.DWYDVKAPA.FNI.NIGKTLVTRTQGTKIASDGLKG..F.VSL | |
Retrocopy | GKDKRLMKGGKK<GAKKKAVDSFYKK>DWYDVKAPATFNIKNIGKTLVTRTQGTKIASDGLKGHMFGVSL |
Parental | ADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVG |
..LQN..V.F.KFKLITE.VQGKNC.TN.HG.D.T.DKMCS.VKKWQT..EAHVDVKTT..YLL.LFCV. | |
Retrocopy | TYLQNYKVVFKKFKLITENVQGKNCRTNIHGIDVTWDKMCSTVKKWQTTTEAHVDVKTTNDYLLHLFCVE |
Parental | FTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL |
.T.K.N.....TS.AQ.QQV.QI.KKMM.I.T..VQT.DLK.VVNKLIP.SIGK.IEKACQSI.P. | |
Retrocopy | LT*KCND--LETS*AQCQQVHQIWKKMMAILTQKVQTSDLKDVVNKLIPHSIGKYIEKACQSILPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |