RetrogeneDB ID: | retro_tbel_1383 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4558:140081..140618(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 81.67 % |
Parental protein coverage: | 68.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MA.GKNK.L.KG.KK.AKKKV.DPFSKKDWYD.KAP.MFNI.NIG.TLVT.TQGTKIA.DGLKG.VFEVS | |
Retrocopy | MAFGKNKHLSKGSKKRAKKKVVDPFSKKDWYDMKAPVMFNI-NIGETLVTGTQGTKIATDGLKGCVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADL.NDEVAFRK..LITEDVQGKNCL.NFHGMDLT.DKMCSMVKKWQTMIEAHV.VKTT..YLL.LF.V | |
Retrocopy | LADLHNDEVAFRKSRLITEDVQGKNCLNNFHGMDLTHDKMCSMVKKWQTMIEAHVGVKTTNDYLLNLFSV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND |
GFT.K..NQI.KTSYAQHQQVRQI.K.MMEIMT.E.QT.. | |
Retrocopy | GFTEKHSNQILKTSYAQHQQVRQIQKMMMEIMTQELQTKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |