RetrogeneDB ID: | retro_tbel_1856 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5877:86020..86510(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 78.92 % |
Parental protein coverage: | 62.12 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC-VGFTK-KRNNQIRKTSYAQHQQVRQI |
L..F.GMDLTRDKMC.MVKKWQTMI.AHVDV.........L.C..G..K.KRN.QI.KTS.AQHQQVRQ. | |
Retrocopy | LPDFQGMDLTRDKMCPMVKKWQTMI*AHVDVNYQWLFASSLLC<LGLLK<KRNSQIWKTSSAQHQQVRQV |
Parental | RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGE |
RKKMMEIMT.EVQTNDLKEVVNKLIP.SIGKD.EKA.QS.Y.LHDVFVRKVKMLK..KFELGKLMELHGE | |
Retrocopy | RKKMMEIMTQEVQTNDLKEVVNKLIPVSIGKDTEKAGQSKYLLHDVFVRKVKMLKELKFELGKLMELHGE |
Parental | GSSSGKATGDETGAKVERADGYEPPV |
GSSSGKATGDETGA.VE.ADGYE.PV | |
Retrocopy | GSSSGKATGDETGA*VE*ADGYELPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |