RetrogeneDB ID: | retro_itri_1070 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393367.1:3089054..3089440(+) | ||
Located in intron of: | ENSSTOG00000013929 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 62.96 % |
Parental protein coverage: | 71.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TKYLKDVTLKKQCVPFRRYNGGVGRCAQQAKQWG-WTQGRWPKKSAE-FLLHMLKNAESNAELKGLDVDS |
.K.LKD....K.CV.F..YNG.V.R.AQ.AKQ.G.WTQG...KK.AE.F....LK...SNAEL..LDVDS | |
Retrocopy | SKNLKDIIVNKPCVLFQHYNGRVERYAQ-AKQAG>WTQGQCTKKNAE>FCCTHLK-MQSNAELQDLDVDS |
Parental | LVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLK |
.VIEHI...K..K..R.TYRAH..IN.YMSS..H.EMILTEKEQIVPK.EE.VA..KKI.QKKLK | |
Retrocopy | PVIEHISR*K--KHLRCTYRAHSHINLYMSSH-HTEMILTEKEQIVPKTEEAVAYNKKIFQKKLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |