RetrogeneDB ID: | retro_itri_181 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | AGTP01147816.1:1223..1494(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 73.47 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MVRYSLDPENP-TKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF-RRYNGGVG |
.V.YSLDP..P.TKS.K.RGSNL.VHFK.T.ETAQAIKGMH...ATKYLKDVTLKK.CVPF...YNGG.G | |
Retrocopy | IVCYSLDPKTP<TKSPK*RGSNLHVHFKDT-ETAQAIKGMH---ATKYLKDVTLKK*CVPF<LCYNGGIG |
Parental | RCAQQAKQWGWTQGRWPKKSAEFLLHML |
RCA.QAKQWG..QG.WP.KS.EFLL..L | |
Retrocopy | RCA-QAKQWG*IQGWWP*KSPEFLLSCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |