RetrogeneDB ID: | retro_itri_513 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393297.1:12338827..12339330(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 55.29 % |
Parental protein coverage: | 91.35 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 1 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRC |
MV.YSLDPENPT.S.KSRGSNL..HFKN..ET..AIK.MHI.K.TKYLKDV.LKKQCVPF...NG..G.. | |
Retrocopy | MVHYSLDPENPT*S*KSRGSNLCGHFKNACETV*AIKAMHI*KVTKYLKDVILKKQCVPFWP*NGPSGDM |
Parental | AQQAKQWGWTQGRWPKK-SAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINP |
.......G...G..P.K..A.F.LH.L.NA..NAELKGLD............K.P.......RAH.RI.P | |
Retrocopy | CRPNNKAGHKVGD-PQK<GADFWLHVLNNADNNAELKGLDYIIRL*KLSR*AKQPTLHACALRAHRRITP |
Parental | YMSSPCHIEMILTEKEQIVPKPEEEVAQKK |
.M.SP.H.E.IL.EKE.IVP..EEEV.... | |
Retrocopy | HMRSPSHMEVILSEKE*IVPNSEEEVIEDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |