RetrogeneDB ID: | retro_itri_1424 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393482.1:3261451..3261728(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 53.61 % |
Parental protein coverage: | 51.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMI-LTEK |
KKSAEFLL..LKN..S.AEL.G.D.DSLVIEHIQ..KA.KM...T.R..GRINPY....CH.EMI..... | |
Retrocopy | KKSAEFLLQVLKNIDSHAELQGVDIDSLVIEHIQAKKASKMSCPTTR--GRINPYVRFLCHNEMI<SLQR |
Parental | EQIVPKPEEEVAQKKKIS-QKKLKKQK |
..............K..S.QKKLKK.K | |
Retrocopy | NELFLNQKRRLHRRKRYS<QKKLKKEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |