RetrogeneDB ID: | retro_itri_1148 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393386.1:4522839..4523199(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 63.85 % |
Parental protein coverage: | 69.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QCVPFRRYNG-GVGRCAQQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAP |
QCVPF..YNG.G.GRCAQ..KQWGW.QGRWPKK..EFLL..LK.A.S......LD.DSLV.EH.QVNK.P | |
Retrocopy | QCVPFWCYNG<GFGRCAQ-VKQWGWMQGRWPKKCDEFLLNILKDAKS----QSLDIDSLVTEHLQVNKEP |
Parental | KMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKK-ISQKKLKKQKLMA |
KM.....RAH..I......PCH.EMI.TEK...VPK.EEEVA.KK..ISQKKLKK.KL.A | |
Retrocopy | KMLHHS*RAHELI---CELPCHNEMIITEKQHMVPKSEEEVADKKN>ISQKKLKK*KLKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |