RetrogeneDB ID: | retro_itri_1312 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393436.1:2067882..2068215(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 60.53 % |
Parental protein coverage: | 60.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QAKQWGWTQGRWPKKSAEFLLHM-LKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYM |
QAKQWGWTQG.WP.KSAEFLL.M.LK...SNA.LKGL..DSLV.EH.QVNKA.K..............Y. | |
Retrocopy | QAKQWGWTQGWWP*KSAEFLLIM>LK-MQSNAPLKGLGRDSLVFEHVQVNKASKVPQHIQSSWPD*YSYI |
Parental | SS-PCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR |
SS.PC..E..L.EKE..VPK.E..VAQ..K.SQKKLKK.K.MA. | |
Retrocopy | SS<PCCTERTLIEKEHPVPKAEKQVAQREKMSQKKLKK*KHMAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |