RetrogeneDB ID: | retro_itri_425 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393290.1:14484906..14485218(-) | ||
Located in intron of: | ENSSTOG00000010565 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 53.77 % |
Parental protein coverage: | 55.68 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | WTQG-RW-PKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCH |
W.Q..RW.P.KSA..LL..LKNA...AELKGL.VDSLVIEHI.VNK.P......YRAHG.INP...S.CH | |
Retrocopy | WAQS>RWMPRKSADILLCILKNADGKAELKGLWVDSLVIEHIHVNKTPR*TGCVYRAHGWINPFIISLCH |
Parental | IE-MILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL |
....ILT...Q.V.KP.....QKKK...K.....K. | |
Retrocopy | NR<IILTATKQTVLKPG**ITQKKKQESKTYGSGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |