RetrogeneDB ID: | retro_itri_834 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393330.1:9799800..9800349(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 79.57 % |
Parental protein coverage: | 99.46 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MVRYSLDPE-NPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGR |
MV.YSLDP..NPTKSCKSR..NL.VHFKNT.E..QAIKGMHI.KATKYLK.VTLKKQ.VPF..YNG.VG. | |
Retrocopy | MVCYSLDPK<NPTKSCKSRSLNLCVHFKNTHESVQAIKGMHI*KATKYLKGVTLKKQSVPFQHYNGEVGS |
Parental | CAQQAKQWGWTQGRWPKKSAEFLLHMLK-NAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRIN |
.AQ.AKQ.GW.Q.R.PKKSAEFLLHMLK.NA.SNAELKGLDVDSLVIEHIQVNKAP.M.R..Y.AHG.IN | |
Retrocopy | FAQ-AKQ*GWAQER*PKKSAEFLLHMLK>NADSNAELKGLDVDSLVIEHIQVNKAPQMHRCIYKAHGQIN |
Parental | PYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR |
.YMSS.C.IEMILTEKEQIVPKPEEEV.QKKKI.QKKLKKQ.L..R | |
Retrocopy | SYMSSSCCIEMILTEKEQIVPKPEEEVVQKKKIPQKKLKKQNLWYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |