RetrogeneDB ID: | retro_itri_1476 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393501.1:217064..217601(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 54.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MVRYSLDPEN-PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGR |
MV.YSL.....P.KSCKSRGSNL.VHF....ET..AIKGMHI.KATK.LKDVTLKKQ.......N...GR | |
Retrocopy | MVYYSLAXXX>PMKSCKSRGSNLHVHFRTIHETVPAIKGMHI*KATKNLKDVTLKKQYFTVQACN---GR |
Parental | CAQQAKQWG-WTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRIN |
CA..AK.WG.WTQ...PK.....L.........NAELK.LD.D.L.IEHIQVNKA..M...TYR.H..IN | |
Retrocopy | CA*-AKHWG<WTQVGGPKNVLN-LCYTC*KMQNNAELKSLDIDYLLIEHIQVNKAHRMHYCTYRPHDQIN |
Parental | PYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE |
PY...P..I.MILTEK.Q..PK...............LKK.KLMA.E | |
Retrocopy | PY-EFPGYIQMILTEKQQFIPKXXXXXXXXXXXXXXXLKK*KLMAQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |