RetrogeneDB ID: | retro_mluc_1311 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429817:1671619..1672111(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPI1 | ||
Ensembl ID: | ENSMLUG00000024989 | ||
Aliases: | None | ||
Description: | Triosephosphate isomerase [Source:UniProtKB/TrEMBL;Acc:G1Q2Y8] |
Percent Identity: | 80.72 % |
Parental protein coverage: | 65.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | DCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNV |
D..ATWV.LGH.E..HVFGESDELIGQKV.H.LAEGLGVI.CIGEKLDER.AGITEKV.FEQTKVI.D.V | |
Retrocopy | DQRATWVALGH*EKKHVFGESDELIGQKVTHVLAEGLGVITCIGEKLDER*AGITEKVDFEQTKVITDKV |
Parental | KD-WSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQCTRIIYGGSVTGANCKELACQ |
KD.W.KV.LAY.PVWAIGTG.TATPQ.AQEVHEKL...LKSNVSDAVAQ.T.IIYGGSV.GA.CKELA.Q | |
Retrocopy | KD>WNKVFLAYDPVWAIGTGNTATPQ*AQEVHEKL*ECLKSNVSDAVAQSTHIIYGGSVIGAICKELASQ |
Parental | PDV-DGFLVGGASLKPEFVDIINAKQ |
.D..DGFLVGGASLK.EF.DIINAKQ | |
Retrocopy | IDM<DGFLVGGASLKLEFLDIINAKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004207 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |