RetrogeneDB ID: | retro_ptro_2565 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:130537048..130537431(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPI1 | ||
Ensembl ID: | ENSPTRG00000004595 | ||
Aliases: | None | ||
Description: | Pan troglodytes triosephosphate isomerase 1 (TPI1), mRNA. [Source:RefSeq mRNA;Acc:NM_001071782] |
Percent Identity: | 84.5 % |
Parental protein coverage: | 51. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSE-RRHVFGESDELIGQK-VAHA |
..ARQKL.PKIAVA.QNCYKVTNGAFTGE.SPGM.KD.G.TWVV......RR.VFGESDELIGQK.VAHA | |
Retrocopy | ELARQKLAPKIAVAPQNCYKVTNGAFTGEMSPGMVKDLGVTWVVWSWGT>RRRVFGESDELIGQK>VAHA |
Parental | LAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKT |
LAE.LGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKV.LAY.PVWA.GTGKT | |
Retrocopy | LAERLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVILAYDPVWAAGTGKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 4 .75 RPM | 602 .46 RPM |
SRP007412_cerebellum | 2 .87 RPM | 278 .72 RPM |
SRP007412_heart | 2 .19 RPM | 265 .67 RPM |
SRP007412_kidney | 2 .96 RPM | 371 .36 RPM |
SRP007412_liver | 3 .80 RPM | 210 .35 RPM |
SRP007412_testis | 2 .95 RPM | 142 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |