Parental gene: | Tpi1, ENSMUSG00000023456 |
| Aliases: | Tpi1, AI255506, Tpi, Tpi-1 |
| Description: | triosephosphate isomerase 1 [Source:MGI Symbol;Acc:MGI:98797] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 6:124810585..124814296(-) |
>ENSMUSG00000023456
ATGGAGGGGAAGGCGGAGCAGCAAGGGGCCGGGCTAACCATGGCGGAGGGCGGGGAGAAGGAGGAGTTCTGCTTCACAGC
CATCTATATAAGTGGCCAGTGGAGAGAGCCGTGCGTTTGTACTGACCTTCAGAGACTTGAGCCTGGTACAATGGCGCCTA
CCAGGAAGTTCTTCGTTGGGGGCAACTGGAAGATGAACGGGAGGAAGAAGTGCCTGGGAGAACTCATCTGCACCCTGAAC
GCAGCCAACGTGCCGGCAGGCACCGAGGTGGTTTGTGCACCGCCCACCGCTTACATCGACTTTGCCAGACAGAAGCTGGA
TCCCAAAATTGCTGTGGCCGCACAGAACTGCTACAAAGTGACCAATGGGGCCTTCACTGGGGAAATCAGCCCTGGCATGA
TCAAAGACTTAGGAGCCACCTGGGTCGTGCTGGGGCACTCAGAAAGAAGACATGTCTTTGGAGAATCAGATGAGCTGATT
GGCCAGAAAGTGAGCCACGCCCTAGCAGAGGGACTCGGGGTGATCGCCTGCATCGGGGAGAAGCTAGACGAAAGGGAAGC
CGGCATCACCGAGAAGGTCGTGTTCGAGCAAACCAAGGTCATCGCAGATAATGTGAAAGACTGGAGCAAGGTGGTCCTGG
CCTATGAACCTGTGTGGGCCATTGGGACTGGCAAGACGGCAACCCCTCAGCAGGCACAGGAAGTACACGAGAAGCTCCGG
GGATGGCTGAAATCCAATGTCAATGATGGGGTGGCTCAGAGCACCCGGATCATTTATGGAGGTTCTGTGACTGGAGCAAC
CTGCAAAGAGCTGGCAAGCCAGCCTGACGTGGACGGCTTCCTTGTGGGTGGCGCATCTCTCAAGCCTGAATTTGTGGACA
TCATCAATGCCAAACAATGA
ATGGAGGGGAAGGCGGAGCAGCAAGGGGCCGGGCTAACCATGGCGGAGGGCGGGGAGAAGGAGGAGTTCTGCTTCACAGC
CATCTATATAAGTGGCCAGTGGAGAGAGCCGTGCGTTTGTACTGACCTTCAGAGACTTGAGCCTGGTACAATGGCGCCTA
CCAGGAAGTTCTTCGTTGGGGGCAACTGGAAGATGAACGGGAGGAAGAAGTGCCTGGGAGAACTCATCTGCACCCTGAAC
GCAGCCAACGTGCCGGCAGGCACCGAGGTGGTTTGTGCACCGCCCACCGCTTACATCGACTTTGCCAGACAGAAGCTGGA
TCCCAAAATTGCTGTGGCCGCACAGAACTGCTACAAAGTGACCAATGGGGCCTTCACTGGGGAAATCAGCCCTGGCATGA
TCAAAGACTTAGGAGCCACCTGGGTCGTGCTGGGGCACTCAGAAAGAAGACATGTCTTTGGAGAATCAGATGAGCTGATT
GGCCAGAAAGTGAGCCACGCCCTAGCAGAGGGACTCGGGGTGATCGCCTGCATCGGGGAGAAGCTAGACGAAAGGGAAGC
CGGCATCACCGAGAAGGTCGTGTTCGAGCAAACCAAGGTCATCGCAGATAATGTGAAAGACTGGAGCAAGGTGGTCCTGG
CCTATGAACCTGTGTGGGCCATTGGGACTGGCAAGACGGCAACCCCTCAGCAGGCACAGGAAGTACACGAGAAGCTCCGG
GGATGGCTGAAATCCAATGTCAATGATGGGGTGGCTCAGAGCACCCGGATCATTTATGGAGGTTCTGTGACTGGAGCAAC
CTGCAAAGAGCTGGCAAGCCAGCCTGACGTGGACGGCTTCCTTGTGGGTGGCGCATCTCTCAAGCCTGAATTTGTGGACA
TCATCAATGCCAAACAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 308 .62 RPM |
| SRP007412_cerebellum | 340 .64 RPM |
| SRP007412_heart | 409 .52 RPM |
| SRP007412_kidney | 450 .52 RPM |
| SRP007412_liver | 259 .08 RPM |
| SRP007412_testis | 293 .10 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007348 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000111669 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002623 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006977 | ortholog_one2one | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000024989 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000005194 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016774 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004821 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031254 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004207 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000004595 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015290 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000050669 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_532 | 82.69 | 86.62 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_558 | 82.71 | 70.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1180 | 81.15 | 86.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_3260 | 76.59 | 67.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000023456 retrocopies