RetrogeneDB ID: | retro_mmul_250 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214732422:31840..32587(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000004310 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.12291 | ||
Ensembl ID: | ENSMMUG00000005194 | ||
Aliases: | None | ||
Description: | Triosephosphate isomerase [Source:UniProtKB/TrEMBL;Acc:F7CT69] |
Percent Identity: | 92.42 % |
Parental protein coverage: | 99.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESD |
.EVV.APPTAYIDFA.QKLDPK.AVAAQNCYKVTNG.FTGEISPGMIKDCGATWVVLGHSERRHVF.ESD | |
Retrocopy | TEVVRAPPTAYIDFAQQKLDPKTAVAAQNCYKVTNGDFTGEISPGMIKDCGATWVVLGHSERRHVFEESD |
Parental | ELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTA |
ELIG.KVAHAL.EGLGVIACIGEKLDEREAGITEKVVF.QTKVIADNVKDWSK.VLAYEP.WAIGTGKTA | |
Retrocopy | ELIGHKVAHALSEGLGVIACIGEKLDEREAGITEKVVFQQTKVIADNVKDWSKAVLAYEPMWAIGTGKTA |
Parental | TPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA |
TPQQAQEVHEK.RGWL.SNVSEA.AQST.IIYGGSVTGAT.KELASQPDVDGFLVGGASLKPEFVDIINA | |
Retrocopy | TPQQAQEVHEKFRGWLESNVSEALAQSTGIIYGGSVTGATYKELASQPDVDGFLVGGASLKPEFVDIINA |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .12 RPM | 228 .92 RPM |
SRP007412_brain_prefrontal_cortex | 5 .00 RPM | 528 .10 RPM |
SRP007412_cerebellum | 0 .71 RPM | 202 .83 RPM |
SRP007412_heart | 3 .47 RPM | 210 .04 RPM |
SRP007412_kidney | 0 .70 RPM | 177 .23 RPM |
SRP007412_liver | 0 .99 RPM | 229 .03 RPM |
SRP007412_testis | 4 .26 RPM | 216 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies |
retro_mmul_1864, retro_mmul_250 ,
|
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004207 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |