RetrogeneDB ID: | retro_mluc_1807 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429916:1905480..1905916(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000027906 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPI1 | ||
Ensembl ID: | ENSMLUG00000024989 | ||
Aliases: | None | ||
Description: | Triosephosphate isomerase [Source:UniProtKB/TrEMBL;Acc:G1Q2Y8] |
Percent Identity: | 79.05 % |
Parental protein coverage: | 58.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | WRPPG-KFFVGG-NWKMNGRKANLGDSSPEHEGFLVISSSEVVCAPPTAYIDFARQKLDPKIAVAAQNCY |
WRPPG.KFF..G.NWKMNGRK..LG..........V....EVVCAPP.AYIDFARQKLDPKIAVAAQNCY | |
Retrocopy | WRPPG<KFFIRG<NWKMNGRKRTLGELITTLNAAKVPADTEVVCAPPMAYIDFARQKLDPKIAVAAQNCY |
Parental | KVMNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAG |
.V.NGAFTGEI.PGMIKDCGATWV.LGH.ERR.VFGESDELI.QKVAHALAE.LGVIAC..EKLDEREAG | |
Retrocopy | RVTNGAFTGEIIPGMIKDCGATWVALGHLERRQVFGESDELIEQKVAHALAEELGVIACFREKLDEREAG |
Parental | ITEKVVFE |
ITEKVVFE | |
Retrocopy | ITEKVVFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004207 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |