RetrogeneDB ID: | retro_hsap_3038 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:49018698..49019204(-) | ||
Located in intron of: | ENSG00000109182 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225455 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPI1 | ||
Ensembl ID: | ENSG00000111669 | ||
Aliases: | TPI1, HEL-S-49, TIM, TPI, TPID | ||
Description: | triosephosphate isomerase 1 [Source:HGNC Symbol;Acc:12009] |
Percent Identity: | 80.92 % |
Parental protein coverage: | 59.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | DTDLQRLGSSAMAPSRKFFV-GG-NWKMNGRKQS-LGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKL |
DTDLQ.L.SSAMAPSRKFF..GG..WKMNG.K.S.LG....TLN..KVPAD.EVVC.PPTAYIDF..QKL | |
Retrocopy | DTDLQCLSSSAMAPSRKFFL<GG<TWKMNGWKKS>LGSSL-TLNVTKVPADAEVVCSPPTAYIDFTQQKL |
Parental | DPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIA |
DPKIAV.AQNCYKVTNGAFTGEISPG.IKDC.ATWVVLGHSERRHVFGESDELI.QKVA.ALAEGLGVI. | |
Retrocopy | DPKIAVPAQNCYKVTNGAFTGEISPGIIKDCRATWVVLGHSERRHVFGESDELIEQKVARALAEGLGVIT |
Parental | CIGEKLDEREAGITEKVVFEQTKVIADNVKDWS |
CIG.KLD.REAGITEKVVFEQ.KVI.D.V...S | |
Retrocopy | CIGKKLDAREAGITEKVVFEQAKVITDKVNGLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 114 .99 RPM |
bodymap2_adrenal | 0 .00 RPM | 166 .21 RPM |
bodymap2_brain | 0 .00 RPM | 183 .44 RPM |
bodymap2_breast | 0 .00 RPM | 100 .37 RPM |
bodymap2_colon | 0 .00 RPM | 201 .02 RPM |
bodymap2_heart | 0 .00 RPM | 249 .39 RPM |
bodymap2_kidney | 0 .00 RPM | 311 .03 RPM |
bodymap2_liver | 0 .00 RPM | 166 .65 RPM |
bodymap2_lung | 0 .00 RPM | 186 .37 RPM |
bodymap2_lymph_node | 0 .00 RPM | 226 .08 RPM |
bodymap2_ovary | 0 .00 RPM | 124 .80 RPM |
bodymap2_prostate | 0 .00 RPM | 229 .77 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 191 .45 RPM |
bodymap2_testis | 0 .00 RPM | 137 .27 RPM |
bodymap2_thyroid | 0 .04 RPM | 125 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 209 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1999 |
Callithrix jacchus | retro_cjac_2190 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies |
retro_hsap_3038 , retro_hsap_3510, retro_hsap_3784,
|
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |