Parental gene: | TPI1, ENSRNOG00000050669 |
| Aliases: | None |
| Description: | None |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 9:19089751..19092584(+) |
>ENSRNOG00000050669
ATGGCGCCTTCCAGGAAGTTCTTCGTCGGGGGCAACTGGAAGATGAACGGGAGGAAGAAATGCCTGGGAGAACTCATCTG
CACTCTGAACGCAGCCAAGCTGCCGGCAGACACCGAGGTGGTTTGTGCACCGCCAACCGCCTACATCGACTTTGCCAGGC
AGAAGCTGGATCCCAAAATTGCTGTGGCTGCACAGAACTGCTACAAAGTGACCAATGGGGCCTTCACTGGGGAAATCAGT
CCTGGCATGATCAAGGACTTAGGAGCTACCTGGGTGGTGCTGGGACACTCTGAAAGAAGACACATCTTTGGGGAATCAGA
CGAGTTGATTGGGCAGAAAGTGAACCATGCCCTATCCGAGGGACTCGGAGTGATCGCCTGCATTGGGGAGAAGTTAGACG
AAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTTGAGCAAACCAAGGCCATCGCAGATAATGTGAAGGACTGGTGCAAG
GTGGTCCTGGCCTATGAACCAGTATGGGCCATTGGGACTGGCAAGACTGCAACCCCTCAACAGGCCCAGGAAGTACACGA
GAAGCTCCGGGGATGGCTGAAATGCAACGTCTCTGAGGGGGTGGCTCAGTGCACTCGGATCATTTATGGAGGTTCTGTGA
CTGGAGCGACTTGCAAAGAGCTGGCAAGCCAGCCTGATGTGGATGGCTTCCTCGTGGGCGGTGCATCTCTCAAGCCTGAA
TTCGTGGACATTATCAATGCCAAACAATGA
ATGGCGCCTTCCAGGAAGTTCTTCGTCGGGGGCAACTGGAAGATGAACGGGAGGAAGAAATGCCTGGGAGAACTCATCTG
CACTCTGAACGCAGCCAAGCTGCCGGCAGACACCGAGGTGGTTTGTGCACCGCCAACCGCCTACATCGACTTTGCCAGGC
AGAAGCTGGATCCCAAAATTGCTGTGGCTGCACAGAACTGCTACAAAGTGACCAATGGGGCCTTCACTGGGGAAATCAGT
CCTGGCATGATCAAGGACTTAGGAGCTACCTGGGTGGTGCTGGGACACTCTGAAAGAAGACACATCTTTGGGGAATCAGA
CGAGTTGATTGGGCAGAAAGTGAACCATGCCCTATCCGAGGGACTCGGAGTGATCGCCTGCATTGGGGAGAAGTTAGACG
AAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTTGAGCAAACCAAGGCCATCGCAGATAATGTGAAGGACTGGTGCAAG
GTGGTCCTGGCCTATGAACCAGTATGGGCCATTGGGACTGGCAAGACTGCAACCCCTCAACAGGCCCAGGAAGTACACGA
GAAGCTCCGGGGATGGCTGAAATGCAACGTCTCTGAGGGGGTGGCTCAGTGCACTCGGATCATTTATGGAGGTTCTGTGA
CTGGAGCGACTTGCAAAGAGCTGGCAAGCCAGCCTGATGTGGATGGCTTCCTCGTGGGCGGTGCATCTCTCAAGCCTGAA
TTCGTGGACATTATCAATGCCAAACAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .07 RPM |
| SRP017611_kidney | 0 .07 RPM |
| SRP017611_brain | 0 .22 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007348 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000111669 | ortholog_one2many | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002623 | ortholog_many2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006977 | ortholog_one2many | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000024989 | ortholog_one2many | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000005194 | ortholog_many2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016774 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000023456 | ortholog_one2many | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004821 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031254 | ortholog_many2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004207 | ortholog_many2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000004595 | ortholog_one2many | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015290 | within_species_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_787 | 75.00 | 50.60 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2615 | 97.99 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000050669 retrocopies