Parental gene:

TPI1, ENSG00000111669

Aliases:TPI1, HEL-S-49, TIM, TPI, TPID
Description:triosephosphate isomerase 1 [Source:HGNC Symbol;Acc:12009]
Organism:Human (Homo sapiens)
Coordinates:12:6976282..6980112(+)


>ENSG00000111669
ATGGCGGAGGACGGCGAGGAGGCGGAGTTCCACTTCGCGGCGCTCTATATAAGTGGGCAGTGGCCGCGACTGCGCGCAGA
CACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCCCTCCAGGAAGTTCTTCGTTGGGGGAAACTGGAAGATGAACG
GGCGGAAGCAGAGTCTGGGGGAGCTCATCGGCACTCTGAACGCGGCCAAGGTGCCGGCCGACACCGAGGTGGTTTGTGCT
CCCCCTACTGCCTATATCGACTTCGCCCGGCAGAAGCTAGATCCCAAGATTGCTGTGGCTGCGCAGAACTGCTACAAAGT
GACTAATGGGGCTTTTACTGGGGAGATCAGCCCTGGCATGATCAAAGACTGCGGAGCCACGTGGGTGGTCCTGGGGCACT
CAGAGAGAAGGCATGTCTTTGGGGAGTCAGATGAGCTGATTGGGCAGAAAGTGGCCCATGCTCTGGCAGAGGGACTCGGA
GTAATCGCCTGCATTGGGGAGAAGCTAGATGAAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTCGAGCAGACAAAGGT
CATCGCAGATAACGTGAAGGACTGGAGCAAGGTCGTCCTGGCCTATGAGCCTGTGTGGGCCATTGGTACTGGCAAGACTG
CAACACCCCAACAGGCCCAGGAAGTACACGAGAAGCTCCGAGGATGGCTGAAGTCCAACGTCTCTGATGCGGTGGCTCAG
AGCACCCGTATCATTTATGGAGGCTCTGTGACTGGGGCAACCTGCAAGGAGCTGGCCAGCCAGCCTGATGTGGATGGCTT
CCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACATCATCAATGCCAAACAATGA

Library Parental gene expression (RPM)
bodymap2_liver 166 .65 RPM
bodymap2_lung 186 .37 RPM
bodymap2_breast 100 .37 RPM
bodymap2_adipose 114 .99 RPM
bodymap2_adrenal 166 .21 RPM
bodymap2_skeletal_muscle 191 .45 RPM
bodymap2_thyroid 125 .62 RPM
bodymap2_prostate 229 .77 RPM
bodymap2_colon 201 .02 RPM
bodymap2_testis 137 .27 RPM
bodymap2_brain 183 .44 RPM
bodymap2_heart 249 .39 RPM
bodymap2_white_blood_cells 209 .50 RPM
bodymap2_lymph_node 226 .08 RPM
bodymap2_ovary 124 .80 RPM
bodymap2_kidney 311 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007348 ortholog_one2one 2 retrogenes
retro_cjac_2190, retro_cjac_2370,
Gorilla gorilla ENSGGOG00000002623 possible_ortholog 1 retrogene
retro_ggor_151,
Macropus eugenii ENSMEUG00000006977 ortholog_one2one 5 retrogenes
retro_meug_1348, retro_meug_1520, retro_meug_1934, retro_meug_267, retro_meug_512,
Myotis lucifugus ENSMLUG00000024989 ortholog_one2one 4 retrogenes
retro_mluc_1090, retro_mluc_1311, retro_mluc_1777, retro_mluc_1807,
Macaca mulatta ENSMMUG00000005194 ortholog_one2many 2 retrogenes
retro_mmul_1864, retro_mmul_250,
Mustela putorius furo ENSMPUG00000016774 ortholog_one2many 1 retrogene
retro_mputfur_136,
Mus musculus ENSMUSG00000023456 ortholog_one2one 4 retrogenes
retro_mmus_1180, retro_mmus_3260, retro_mmus_532, retro_mmus_558,
Nomascus leucogenys ENSNLEG00000004821 ortholog_one2one 2 retrogenes
retro_nleu_1120, retro_nleu_847,
Otolemur garnettii ENSOGAG00000031254 ortholog_one2many 1 retrogene
retro_ogar_109,
Pan troglodytes ENSPTRG00000004595 ortholog_one2one 4 retrogenes
retro_ptro_160, retro_ptro_1999, retro_ptro_2382, retro_ptro_2565,
Rattus norvegicus ENSRNOG00000015290 ortholog_one2many 1 retrogene
retro_rnor_1304,
Rattus norvegicus ENSRNOG00000050669 ortholog_one2many 2 retrogenes
retro_rnor_2615, retro_rnor_787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3038 80.92 59.44
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2. retro_hsap_3510 69.66 91.96
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3. retro_hsap_3784 84.64 92.66
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Download FASTA sequences of all ENSG00000111669 retrocopies