RetrogeneDB ID: | retro_rnor_1304 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:43491970..43492340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tpi1 | ||
Ensembl ID: | ENSRNOG00000015290 | ||
Aliases: | Tpi1, Tpi | ||
Description: | Triosephosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:P48500] |
Percent Identity: | 55.04 % |
Parental protein coverage: | 51. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEP-VWAIGTGKTATPQQAQEVHEKLR |
LGV..CIGEKLDEREAGIT..VVFEQT................YE..VWAIGTG.T.TP...QE.....R | |
Retrocopy | LGVMLCIGEKLDEREAGITKTVVFEQT*FTXXXXXXXXXXIMTYEQ<VWAIGTGTTTTP---QEPRKYMR |
Parental | GWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLV-GGASLKPEFVDIINAK |
..........V.Q.T.II.GGSVTGATCK.LA..P.VD.FL..GG..LKPE.VDI.N.K | |
Retrocopy | CYD*NPMCDVVTQITHIISGGSVTGATCKGLAN*PGVDSFLL<GGTPLKPELVDITNDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004207 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy |
retro_rnor_1304 ,
|
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |