RetrogeneDB ID: | retro_mluc_1777 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429907:1840761..1841327(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPI1 | ||
Ensembl ID: | ENSMLUG00000024989 | ||
Aliases: | None | ||
Description: | Triosephosphate isomerase [Source:UniProtKB/TrEMBL;Acc:G1Q2Y8] |
Percent Identity: | 68.75 % |
Parental protein coverage: | 76.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LVISSSEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVMNGAFTGEISPGMIKDCGATWVVLGHSERRHV |
L.....EVVCAP.T.Y.DF.RQ.LD..IAV.AQNCY.V..GAFTGE.SP..I.DCGAT.VVL....RR.V | |
Retrocopy | LNVAHAEVVCAPATTYMDFTRQQLDAEIAVTAQNCYRVTDGAFTGETSPSLI*DCGATGVVLRQLKRRLV |
Parental | FGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGI-TEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI |
FGESDELI.QKVAHALAEGLGVI...GEKL.ER.AGI..EKV.FEQTKVIADN.KD..KV.LAYEPVWAI | |
Retrocopy | FGESDELIWQKVAHALAEGLGVIT--GEKLAERKAGI<PEKVDFEQTKVIADNMKD*NKVLLAYEPVWAI |
Parental | GTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQCTRIIYGGSVTGANCKELAC |
GTGKTATPQQAQEVH.KL.GWLKSN.SDAV.Q.T............C....C | |
Retrocopy | GTGKTATPQQAQEVHRKLWGWLKSNISDAVTQTTCVFMWLGQPARSCQASLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004207 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |