RetrogeneDB ID: | retro_mmus_1180 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:16946653..16947433(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tpi1 | ||
Ensembl ID: | ENSMUSG00000023456 | ||
Aliases: | Tpi1, AI255506, Tpi, Tpi-1 | ||
Description: | triosephosphate isomerase 1 [Source:MGI Symbol;Acc:MGI:98797] |
Percent Identity: | 81.15 % |
Parental protein coverage: | 86.96 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | CTDLQRLEPGTMAPTRKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTAYIDFARQKLDPK |
CT.L.RLE..TMAP.RKFFVGGNWKMNGRKKCL.ELICTLN.A..PAGTEVVCAPPTA.I.FARQKLDPK | |
Retrocopy | CTGLPRLELSTMAPSRKFFVGGNWKMNGRKKCLRELICTLNEAKGPAGTEVVCAPPTA*INFARQKLDPK |
Parental | IAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIG |
IA.AA.NCY.VTNG.FTGEISP.M.KD.G.TWV.LGHSE.RHVFGESDEL.G.KV.HAL.EGLGVI.CI. | |
Retrocopy | IAMAALNCYRVTNGTFTGEISPDMVKDVGVTWVMLGHSEGRHVFGESDELVG*KVNHALVEGLGVITCIE |
Parental | EKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVND |
EKLDERE.G.TE.V.F.QTKVI.DNVKD.S...LA.EPVWAIGTGKTAT.QQ.QEVHEKL.GWLKSNV.D | |
Retrocopy | EKLDEREVGVTEEVFFKQTKVITDNVKDRSEMDLACEPVWAIGTGKTATSQQVQEVHEKLQGWLKSNVSD |
Parental | GVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ |
GVAQ.TRIIY.G.VTGATCKELASQPD.D.FLVGGASLKPE.VDIINAK. | |
Retrocopy | GVAQCTRIIYQGCVTGATCKELASQPDIDDFLVGGASLKPECVDIINAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 308 .62 RPM |
SRP007412_cerebellum | 0 .00 RPM | 340 .64 RPM |
SRP007412_heart | 0 .00 RPM | 409 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 450 .52 RPM |
SRP007412_liver | 0 .00 RPM | 259 .08 RPM |
SRP007412_testis | 0 .00 RPM | 293 .10 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_33032 | 369 libraries | 354 libraries | 330 libraries | 18 libraries | 1 library |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004207 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |