RetrogeneDB ID: | retro_rnor_2615 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 8:26363812..26364559(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031706 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPI1 | ||
Ensembl ID: | ENSRNOG00000050669 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPSRKFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKV |
MAPSRKFFVGGNWKMNG.KKCLGELICTLNAAK.PADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKV | |
Retrocopy | MAPSRKFFVGGNWKMNGKKKCLGELICTLNAAKMPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKV |
Parental | TNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGIT |
TNGAFTGEISPGMIKDLGATWVVLGHSERRH.FGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGIT | |
Retrocopy | TNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGIT |
Parental | EKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYG |
EKVVFEQTKAIADNVKDW.KVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSE.VAQCTRIIYG | |
Retrocopy | EKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEEVAQCTRIIYG |
Parental | GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ |
GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ | |
Retrocopy | GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .51 RPM | 0 .22 RPM |
SRP017611_kidney | 0 .49 RPM | 0 .07 RPM |
SRP017611_liver | 0 .07 RPM | 0 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007348 | 2 retrocopies | |
Homo sapiens | ENSG00000111669 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002623 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006977 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024989 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005194 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016774 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023456 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004821 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031254 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004207 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004595 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050669 | 2 retrocopies |
retro_rnor_2615 , retro_rnor_787,
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