RetrogeneDB ID: | retro_mmur_440 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_3147:185509..186612(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSMICG00000004419 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 76.28 % |
Parental protein coverage: | 87.17 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | NNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVN |
...QPYAV.ELAGHQTSAESW.TGRAVA.IPRV.GGGTHRSGQGAFGN.C.GG.MFAPTKTW.RWHRRV. | |
Retrocopy | SKEQPYAVRELAGHQTSAESWSTGRAVAIIPRVQGGGTHRSGQGAFGNTCHGGCMFAPTKTWHRWHRRVD |
Parental | TTQKRYAICSAL-AASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYA |
TTQK.YAICS.L.AAS.LPALV.SKGH.IEEV.ELPLVV.DKVE.YK.TKEA.L..KKLK.WNDIK..YA | |
Retrocopy | TTQK*YAICSVL<AASVLPALVLSKGHHIEEVSELPLVVADKVEDYKNTKEAALFVKKLKTWNDIKRIYA |
Parental | SQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGG-HVGRFCIWTE |
SQR..AGKGK.RN...IQ.RG.CIIY.EDNGIIKAF.NIPGIT.LNVSKLNILKLAPGG.HVG.FCIWTE | |
Retrocopy | SQRIKAGKGKVRNHHHIQCRGSCIIYCEDNGIIKAFGNIPGITFLNVSKLNILKLAPGG>HVGCFCIWTE |
Parental | SAFRKLDELYGTWRKAASLKSNY-NLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLR |
SAF.KL.ELYGTW.KAASLKSNY..LPMHKMINT.LSRILKSP.IQRAL.AP.KKIHRRVLKK.PL.N.R | |
Retrocopy | SAFQKLEELYGTWCKAASLKSNY<HLPMHKMINTGLSRILKSPGIQRAL*APHKKIHRRVLKKSPLENQR |
Parental | IMLKLNPYAKTMRRNTILRQARNHKLRVAKAAAAVRAKSDEKGVADKKPVVVKKGKKLVGVKKQKKPLVG |
I.L.LNPYAKT....TI.RQARNHKL.V.K.AAA..AKS.EKGVA.KK.VVVKKG.K.VGVKK....... | |
Retrocopy | IILMLNPYAKTVCHSTIFRQARNHKLWVDKTAAAI*AKSVEKGVAGKKTVVVKKGEKPVGVKKXXXXAAS |
Parental | -KKAASTKKPAAEKKPAEKKP |
.KK.A..KKPA.......KKP | |
Retrocopy | TKKLAAEKKPAEITMAEKKKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |