RetrogeneDB ID: | retro_dnov_1152 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_155393:181..845(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSDNOG00000006693 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 88.44 % |
Parental protein coverage: | 53.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | PELPLVV-EDKVEGY-KKT-KEAVLL-LKKL-KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN |
PELP......K.EGY..KT.KEAVLL..KKL.KAWNDIKKVYASQRM.AGK.KM.N.RRIQRRGPCII.N | |
Retrocopy | PELPFSG*KIKLEGY>RKT>KEAVLL>IKKL>KAWNDIKKVYASQRMKAGKSKMGNHRRIQRRGPCIICN |
Parental | EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMH |
EDNGIIKAFRNIPGITLLNVSK......APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMH | |
Retrocopy | EDNGIIKAFRNIPGITLLNVSKAEHFE-APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMH |
Parental | KMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVD |
KMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTIL.QARNHKLRVD | |
Retrocopy | KMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILLQARNHKLRVD |
Parental | KAAAALEARSDEKGV |
KAAAAL.ARSDEKGV | |
Retrocopy | KAAAALGARSDEKGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 11 .28 RPM | 996 .84 RPM |
SRP012922_cerebellum | 5 .22 RPM | 548 .91 RPM |
SRP012922_heart | 3 .94 RPM | 446 .89 RPM |
SRP012922_kidney | 13 .69 RPM | 913 .93 RPM |
SRP012922_liver | 5 .57 RPM | 466 .90 RPM |
SRP012922_lung | 14 .97 RPM | 993 .93 RPM |
SRP012922_quadricep_muscle | 7 .27 RPM | 1087 .32 RPM |
SRP012922_spleen | 11 .33 RPM | 1417 .60 RPM |