RetrogeneDB ID: | retro_tbel_3577 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_145078:51533..52571(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSTBEG00000014392 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 88.73 % |
Parental protein coverage: | 82.19 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | RKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRR |
RKNNRQP.AVSELAGHQT.AESWGTGRAV..I.RVRG.GTHRSGQGAFGNMC.GGRMFAPT.T...WH.R | |
Retrocopy | RKNNRQP*AVSELAGHQTRAESWGTGRAVTQILRVRGSGTHRSGQGAFGNMC*GGRMFAPTETRQHWHCR |
Parental | VNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVY |
VNTTQK.YAICSALAASALPALVMSKGHRIEE.PELPLV.EDKVE.Y.KTKEAVLL.KKLKA.NDIKKVY | |
Retrocopy | VNTTQKQYAICSALAASALPALVMSKGHRIEEAPELPLVAEDKVESYNKTKEAVLLIKKLKARNDIKKVY |
Parental | ASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTE |
ASQ.MRAGKGKMRN...IQRRGPCIIYNEDNGII.AFRNIPGITLLNVSKLNILKLAPG.HVG..CIWTE | |
Retrocopy | ASQ*MRAGKGKMRNLCHIQRRGPCIIYNEDNGIINAFRNIPGITLLNVSKLNILKLAPGEHVGHLCIWTE |
Parental | SAFRKLDELYGTWRKSASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRI |
SAF.KLDELYGTWRKSASLKSNYNLPMHKMMNTDLSRIL.SPEIQRAL.APRKKIHRRVLKKNPLKNLRI | |
Retrocopy | SAFWKLDELYGTWRKSASLKSNYNLPMHKMMNTDLSRILRSPEIQRAL*APRKKIHRRVLKKNPLKNLRI |
Parental | MLKLNPYAKTMRRNTILRQARNHKKRLDKVAAALEAKSDEKGVAAKKPVEGKKGKGVGAKQQKKPL |
M.KLNPYAKTMR.NTI..QARNHKK.LDKVAAALEA..DEK.VAAKKPV.GKKGKGVGAKQQKKPL | |
Retrocopy | MMKLNPYAKTMRWNTIPCQARNHKKWLDKVAAALEARADEKRVAAKKPVVGKKGKGVGAKQQKKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |