RetrogeneDB ID: | retro_pvam_216 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1940:133310..134016(+) | ||
Located in intron of: | ENSPVAG00000007976 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSPVAG00000000068 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 75.52 % |
Parental protein coverage: | 55.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | YSDGESSGKNVTS-SAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVR |
Y..G.SSGKNVT....VFK.PI.PDIVNFVHT.L.KN.RQPY.VSELAGHQTSA..W.TGRAVARIPR.. | |
Retrocopy | YKKGKSSGKNVTFLPTVFKTPIQPDIVNFVHTTLCKNSRQPYVVSELAGHQTSAMPWSTGRAVARIPRSK |
Parental | -GGGTHRSGQGAFGNMCRG-GRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVP |
.GG.TH.SGQ.AFGNMC.G.G.MFA..KT.R.WHRRVNTTQK.YAI.SAL.A.ALPAL..SK.H.I.EV. | |
Retrocopy | >GG-THHSGQRAFGNMCCG<GHMFASIKTSRHWHRRVNTTQK*YAIFSALSAPALPALIISKNHHIKEVL |
Parental | ELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED-NGI |
.LPL.VE.KVEGYKK.KE..LLLKK.KAWNDIKKVY.SQ.MRAGKGK.RNR..I..R.PCIIYNE..NGI | |
Retrocopy | KLPLMVEGKVEGYKKIKEVILLLKKFKAWNDIKKVYTSQQMRAGKGKRRNRSYIEHRRPCIIYNEE<NGI |
Parental | IKAFR-NIPGITLLNVSKLNILKLAPGGHVG |
IKAFR..IPGITLLNVSKLNIL.LAPGGHVG | |
Retrocopy | IKAFR<KIPGITLLNVSKLNILNLAPGGHVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |