RetrogeneDB ID: | retro_ttru_789 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3452:258815..259964(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSTTRG00000010206 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 90.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG |
MACARPLISVYS.KGE.S.KNVTLPAVF..PIRPDIVNFVH..L..NNR...A..ELAGHQTSAESWGTG | |
Retrocopy | MACARPLISVYSKKGEPSDKNVTLPAVFR-PIRPDIVNFVHASLCENNRPLDAIRELAGHQTSAESWGTG |
Parental | RAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK |
RAVA.IPRVRGGGTHRSGQ..F.NMC.GG.MFAPTK.WRRWH.RVNT.QKRYAI.SALAASA.PALVMS. | |
Retrocopy | RAVAQIPRVRGGGTHRSGQDGFANMCLGGCMFAPTKIWRRWHHRVNTMQKRYAIRSALAASASPALVMSR |
Parental | GHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII |
GH.I.EVPELPLV.EDKVEGY.KTKEAVL.LKKLKAWND.KKVYASQ.MRAGKGKMRNR...Q.R..CII | |
Retrocopy | GHHIGEVPELPLVAEDKVEGYEKTKEAVLPLKKLKAWNDVKKVYASQPMRAGKGKMRNRCCTQSRIHCII |
Parental | YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKSASLKSN--YN |
...D.GIIKAFRNIPGITLLN.SKLN.LKLAPGGHVG..CIWTESAF.KLDEL.GTWRK.ASL..N..YN | |
Retrocopy | CHGDSGIIKAFRNIPGITLLNISKLNVLKLAPGGHVGCSCIWTESAFCKLDELCGTWRKAASLQTNY*YN |
Parental | LPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHK |
LPMHK.L.TDLSR.LKSPEIQRAL.APRKKIH.RVL.KNPLKNLRIMLKLNPYAKTMRRNTI..QA.NHK | |
Retrocopy | LPMHKVLSTDLSRTLKSPEIQRAL*APRKKIHLRVLRKNPLKNLRIMLKLNPYAKTMRRNTIVLQAKNHK |
Parental | IRMDRVAAALEAKSDEKGIPGKKPVMGKKGKEAI |
I.M.R.AAALE.KSDEK..PGKKPV.GKKGK.A. | |
Retrocopy | IQMHRAAAALEDKSDEKEVPGKKPVVGKKGKKAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |