RetrogeneDB ID: | retro_ttru_177 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1488:231099..232060(+) | ||
Located in intron of: | ENSTTRG00000003677 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSTTRG00000010206 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 76.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG |
MACARPL.SVYSEKGESSGKNVTLPAVFKAPIRPD.VNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG | |
Retrocopy | MACARPLLSVYSEKGESSGKNVTLPAVFKAPIRPDTVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG |
Parental | RAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK |
RAVAR.PRVRGGGTHRSGQGAFGNMCRGG...APTKT...WHRRVNTTQKR.AIC.ALAASALPA.VMSK | |
Retrocopy | RAVARTPRVRGGGTHRSGQGAFGNMCRGGCTLAPTKTRQHWHRRVNTTQKRHAICFALAASALPAPVMSK |
Parental | GHRIEEVPELPLVVEDKVEGYKKTKEAVLL-LKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCI |
GHR.EEVPELPLVVEDKVEGYKKTKEAVLL.LKK.KAWNDIKKVYASQRMRAGKGKMRNR.RIQ.RG.CI | |
Retrocopy | GHRTEEVPELPLVVEDKVEGYKKTKEAVLL<LKKFKAWNDIKKVYASQRMRAGKGKMRNRCRIQSRGSCI |
Parental | IYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPG-GHVGRFCIWTESA-FRKLDELYGTWRKSASLKSNY |
IYNEDNGIIKAFRNIPGITLL.VSKLNILKLAPG.GHVGR.CIWTESA.FRK..ELYG.WRK.A.LKSNY | |
Retrocopy | IYNEDNGIIKAFRNIPGITLLDVSKLNILKLAPG>GHVGRSCIWTESA>FRK*EELYGMWRKAAPLKSNY |
Parental | NLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLK |
NLP.HKMLNTDLSRILKSPE..RALRAPR.KIHRR.......K | |
Retrocopy | NLPTHKMLNTDLSRILKSPET*RALRAPRRKIHRRLEEESTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |