RetrogeneDB ID: | retro_ecab_428 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 18:21279203..21279966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL4 | ||
Ensembl ID: | ENSECAG00000023179 | ||
Aliases: | None | ||
Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
Percent Identity: | 70.99 % |
Parental protein coverage: | 58.94 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | LRGAWPSPLPAMACARPLISVYS-EKGE-SSGKNVT-LPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSE |
LR..WPSPLP...CA.PLISVYS..KG..SSGKNVT.LPAVFKA.I.PD.VNFVHT.LRKNNRQP.AVSE | |
Retrocopy | LRRSWPSPLPTIVCACPLISVYS<QKGD<SSGKNVT<LPAVFKALI*PDTVNFVHTKLRKNNRQPCAVSE |
Parental | LAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS |
LAGH.T.AESW.TG.AVA.....R......SGQG.F.N.C.G..M..PTKTW...H.RVNTT.K..AICS | |
Retrocopy | LAGHHTTAESWSTGKAVAGTQSLR*WDS-QSGQGVFRNTCCGSQMCSPTKTWLACHCRVNTTLKQ*AICS |
Parental | ALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKM |
.LA.S.LPALVM.K...I.EV.ELP..VEDKVE.YKKTKEAVLLLKK.KAWNDIK.VY..Q.MRAG.G.. | |
Retrocopy | VLASSVLPALVMTKDYCI*EVSELPMMVEDKVEGYKKTKEAVLLLKKFKAWNDIKYVYVYQQMRAGEGRI |
Parental | RNR-RRIQRRGPCIIYNEDNGIIKAFRNI-PGITLLNVSKLNILKLAPGGHV |
R.R...IQ.RGPCI.YNEDN.IIKAFRNI.PGI.LLNVSKLNIL.LAPGGHV | |
Retrocopy | RSR<HHIQFRGPCIFYNEDNSIIKAFRNI<PGISLLNVSKLNILTLAPGGHV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .12 RPM | 1617 .95 RPM |
SRP021940_cerebellum | 0 .00 RPM | 493 .67 RPM |
SRP021940_embryo | 0 .23 RPM | 1700 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 665 .76 RPM |
SRP021940_synovial_membrane | 0 .14 RPM | 903 .42 RPM |
SRP021940_testis | 0 .00 RPM | 442 .42 RPM |