RetrogeneDB ID: | retro_mmus_2155 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:43250386..43250810(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Acp1 | ||
Ensembl ID: | ENSMUSG00000044573 | ||
Aliases: | Acp1, 4632432E04Rik, AI427468, Acp-1, LMW-PTP | ||
Description: | acid phosphatase 1, soluble [Source:MGI Symbol;Acc:MGI:87881] |
Percent Identity: | 87.67 % |
Parental protein coverage: | 91.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAEVGSKSVLFVCLGNICRSPIAEAVFRKLVTDEKVSDNWAIDSSAVS-DWNVGRPPDPRAVSCLRNHGI |
MAEVGSKSVLFVCLGNIC.SPIAEAVFRKLVTD..VS.NWAIDSSAVS.D.N.GRPPDPRAVSCLRNHGI | |
Retrocopy | MAEVGSKSVLFVCLGNICWSPIAEAVFRKLVTDKRVSGNWAIDSSAVS>DRNKGRPPDPRAVSCLRNHGI |
Parental | STAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDF |
STAHKARQITK.DFATFDYILCMDE.NLRDLNRKSNQ.KNCKA.....GSYDPQ..LIIEDPYYGNDSDF | |
Retrocopy | STAHKARQITKVDFATFDYILCMDETNLRDLNRKSNQLKNCKA----IGSYDPQRKLIIEDPYYGNDSDF |
Parental | EVVYQQ |
EVV.QQ | |
Retrocopy | EVVCQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 16 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .86 RPM |
SRP007412_heart | 0 .00 RPM | 10 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .45 RPM |
SRP007412_liver | 0 .00 RPM | 19 .03 RPM |
SRP007412_testis | 0 .00 RPM | 11 .53 RPM |