RetrogeneDB ID: | retro_btau_1099 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 26:17248111..17248582(+) | ||
Located in intron of: | ENSBTAG00000039132 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSBTAG00000020498 | ||
Aliases: | None | ||
Description: | Low molecular weight phosphotyrosine protein phosphatase [Source:UniProtKB/Swiss-Prot;Acc:P11064] |
Percent Identity: | 98.09 % |
Parental protein coverage: | 99.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAEQVTKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRNHGIN |
MAEQVTKSVLFVCLGNICR.PIAEAVFRKLVTDQNISDNW.IDSGAVSDWNVGRSPDPRAVSCLRNHGIN | |
Retrocopy | MAEQVTKSVLFVCLGNICRLPIAEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVSCLRNHGIN |
Parental | TAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGNDADFE |
TAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKI.LLGSYDPQKQLIIEDPYYGNDADFE | |
Retrocopy | TAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIKLLGSYDPQKQLIIEDPYYGNDADFE |
Parental | TVYQQCVRCCRAFLEKV |
TVYQQCVRCCRAFLEKV | |
Retrocopy | TVYQQCVRCCRAFLEKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .22 RPM | 28 .33 RPM |
ERP005899_muscle | 0 .00 RPM | 35 .58 RPM |
SRP017611_brain | 0 .05 RPM | 42 .07 RPM |
SRP017611_kidney | 0 .06 RPM | 45 .05 RPM |
SRP017611_liver | 0 .08 RPM | 27 .86 RPM |
SRP030211_testis | 0 .35 RPM | 89 .93 RPM |