RetrogeneDB ID: | retro_ocun_1192 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:56669712..56669985(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSOCUG00000012876 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 63.83 % |
Parental protein coverage: | 55.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | HGVPMSHVARQVTKEDFATFDYILC-MDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGN |
HG....H...QVTKED.A...Y.L...DESNL..L.R.SNQV..CKAKIELLGS.DP.KQLI..DPYYG. | |
Retrocopy | HGLSTVHQT*QVTKEDLAVLSYRLS<IDESNLSELSRASNQVEKCKAKIELLGSCDP*KQLIT*DPYYGD |
Parental | DADFEAVYQQCVR-CCRAFLEKAH |
..DFE..Y.QCVR.C.R.FLEKAH | |
Retrocopy | SLDFEPGYWQCVR>C-RSFLEKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .78 RPM |
SRP017611_liver | 0 .00 RPM | 14 .80 RPM |