RetrogeneDB ID: | retro_ocun_1743 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018838:576791..577087(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSOCUG00000012876 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 78. % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GQECMRRHGVPMSHVARQVTKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAK-IELLGSYDPQKQLII |
GQE.M...GVPMSH.A.QVTK.DFAT.DYILC.DESNLRDLNRKSNQVKNCK.K.I.L.GSYDP.KQLII | |
Retrocopy | GQEFMWSQGVPMSHMALQVTKGDFATSDYILCRDESNLRDLNRKSNQVKNCKVK<I*LFGSYDP*KQLII |
Parental | EDPYYGNDADFEAVYQQCVRCCRAFLEKAH |
EDPYYGN..DFEAV..Q.V.C.RA.LEKAH | |
Retrocopy | EDPYYGNEVDFEAV*HQHVWCYRALLEKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .78 RPM |
SRP017611_liver | 0 .00 RPM | 14 .80 RPM |