RetrogeneDB ID: | retro_rnor_2382 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:101359877..101360361(-) | ||
Located in intron of: | ENSRNOG00000004826 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Acp1 | ||
Ensembl ID: | ENSRNOG00000005260 | ||
Aliases: | None | ||
Description: | Low molecular weight phosphotyrosine protein phosphatase [Source:UniProtKB/Swiss-Prot;Acc:P41498] |
Percent Identity: | 96.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAEVGSKSVLFVCLGNICRSPIAEAVFRKLVTDENVSDNWRIDSAATSTYEVGNPPDYRGQNCMKKHGIH |
MAEVGSKSVLFVCLGNICRSPIAEAVFRKLVTDENVSDNWRIDSAATSTYEVGNPPDY.GQNCMKKHG.H | |
Retrocopy | MAEVGSKSVLFVCLGNICRSPIAEAVFRKLVTDENVSDNWRIDSAATSTYEVGNPPDYQGQNCMKKHGVH |
Parental | MQHIARQITREDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDFE |
MQHIA.QITREDFATFDYILC.DESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDFE | |
Retrocopy | MQHIAWQITREDFATFDYILCVDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDFE |
Parental | VVYQQCLRCCKAFLEK-LTSWS |
VVYQQCLRCCKAFLEK.LTSWS | |
Retrocopy | VVYQQCLRCCKAFLEK>LTSWS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .35 RPM |
SRP017611_kidney | 0 .07 RPM | 22 .75 RPM |
SRP017611_liver | 0 .20 RPM | 10 .56 RPM |