RetrogeneDB ID: | retro_mputfur_272 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896900.1:33662756..33663369(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMPUG00000008686 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSMPUG00000016432 | ||
Aliases: | None | ||
Description: | suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343] |
Percent Identity: | 67.46 % |
Parental protein coverage: | 58.45 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | VAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQ-KPNAAIRDCDRAIEINPDSAQPYKW |
VA.IDAL.DGEL.KAIDLFT...KLN..LAILYA...SVFIKLQ..PNAAI.D.D.A.EINP.SA.P... | |
Retrocopy | VADIDALSDGELWKAIDLFTGVLKLNLHLAILYARKVSVFIKLQ<EPNAAI*DYD*ATEINPNSALPSE* |
Parental | RGKAHRLLGHWEEAAHDLALACKLDYDEDA-SAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKK |
.GKAHRL.GHW..AA.DLA.ACKLDY.EDA.S.ML.EVQPRA.KIAEH.RK.E.K.EE..IK.RIERVKK | |
Retrocopy | *GKAHRLQGHWKDAARDLAHACKLDYEEDA<SCMLEEVQPRALKIAEHVRKDEQKHEEQKIKLRIERVKK |
Parental | AREEHERAQREEEARRQSGAQYGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEIL---SDPEV |
A.E.HE.AQREEEAR..SGAQ.GSFP..F.GGMPG....GMPGMA.GMPG........E.L....DPE. | |
Retrocopy | A*EGHETAQREEEARGPSGAQDGSFPVYFLGGMPG-MG*GMPGMA-GMPGLNEIHSDPEVLIATQDPEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005227 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000013880 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006202 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000001139 | 14 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012676 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004644 | 11 retrocopies | |
Cavia porcellus | ENSCPOG00000002290 | 4 retrocopies | |
Felis catus | ENSFCAG00000011847 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000026747 | 16 retrocopies | |
Myotis lucifugus | ENSMLUG00000007764 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019118 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000013042 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016432 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000016932 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011858 | 14 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000000319 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003165 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011510 | 5 retrocopies |