RetrogeneDB ID:

retro_ttru_670

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_304:160963..161796(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ST13
Ensembl ID:ENSTTRG00000011510
Aliases:None
Description:suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]


Retrocopy-Parental alignment summary:






>retro_ttru_670
ATGGACCTTCCCAAAGTGAGCGAGCTTTGAACCTTCGTGAAGATGTGTAAGCAGGATGCCAGTGTCCTGAACACTGAAGA
AATGCACTTCCTGAGGGAGCGGGTGGAGGTCATTGGAGGAAAAATACCACCTGCTACTCATAAAACTAAATCAGCACATA
CCAAGAAAGAAAAACCAGATAGTGAGAAATCAGAGGAAAACATAAAGACAGATGAAACATCAAGTGAGGAAAGTGATCTA
GAAATTGAAGGTGCGATTGAACCAGACACGGTTGCCCCCTCAAGAAATGGGAGATAAAAATGTTGAGATAACTGAGGGGA
TGATGCATGAGGCAAAGGATAAAAATGTGGCTGCCATTGAGCCCTAAATGATGGTGAACTACAGAAAGCCATTGACTAGT
TCACAGATACCATCAGGCTGAATCCTTGCTTGGCCATTCCATATGCCAAGAGAGCCAGTGTCTTCATCAAATTACAGAAG
CCAAATGCTGTCATCTGAGACTGTGACAGAGATATTGAAATAAATCCCGATTCAGCTCAGCCTTACAAGTGGGCCGGGAA
AGCGCACATACCTCTGGGCCATTGTGTAGAAGCAGTCCGTGATCTTGCCCTTGCCTGTAAACTGGATTATGATGAAGATG
CTAGTGCAATGCTGAAAGAAGTTCAACCAAGGGCCCAGAAAACTGCTGAACATCAGAGAAAGTATGAGGGAAAACATGAA
GAGCGAGAGATCAAAGGAAAAAGAGAAAGGCTTAAGAAGGCTCGGGAAGAACATAAGAGAGCCCAGAGTGGGGAATAAGT
CAGGAGACATCAGGAACTCAGTGTGGCTGTTTT

ORF - retro_ttru_670 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.76 %
Parental protein coverage: 76.15 %
Number of stop codons detected: 4
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLKEWVESMGGKIPPATHKTKLEENTKEEKTDSRKAEENIK
MD..KVSEL..FVKMCKQD.SVL.TEEM.FL.E.VE..GGKIPPATHKTK....TK.EK.DS.K.EENIK
RetrocopyMDLPKVSEL*TFVKMCKQDASVLNTEEMHFLRERVEVIGGKIPPATHKTK-SAHTKKEKPDSEKSEENIK
ParentalTDEPSSEESDLEIDNEGVIEPDTDAP-QEMGDENVEITEEMMDQANDKKVAAID-ALNDGELQKAIDLFT
TDE.SSEESDLEI..EG.IEPDT.AP.QEMGD.NVEITE.MM..A.DK.VAAI..ALNDGELQKAID.FT
RetrocopyTDETSSEESDLEI--EGAIEPDTVAP>QEMGDKNVEITEGMMHEAKDKNVAAIE<ALNDGELQKAID*FT
ParentalDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALA
D.I.LNP.LAI.YAKRASVFIKLQKPNA.I.DCDR.IEINPDSAQPYKW.GKAH..LGH..EA..DLALA
RetrocopyDTIRLNPCLAIPYAKRASVFIKLQKPNAVI*DCDRDIEINPDSAQPYKWAGKAHIPLGHCVEAVRDLALA
ParentalCKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQ-SGAQ
CKLDYDEDASAMLKEVQPRAQK.AEH.RKYE.K.EEREIK...ER.KKAREEH.RAQ..E..RR..SG.Q
RetrocopyCKLDYDEDASAMLKEVQPRAQKTAEHQRKYEGKHEEREIKGKRERLKKAREEHKRAQSGE*VRRH<SGTQ
ParentalYGSF
.G.F
RetrocopyCGCF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_670 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_670 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 99 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000052271 retrocopy
Ailuropoda melanoleuca ENSAMEG000000138801 retrocopy
Bos taurus ENSBTAG000000062024 retrocopies
Canis familiaris ENSCAFG0000000113914 retrocopies
Choloepus hoffmanni ENSCHOG000000126761 retrocopy
Callithrix jacchus ENSCJAG0000000464411 retrocopies
Cavia porcellus ENSCPOG000000022904 retrocopies
Felis catus ENSFCAG000000118472 retrocopies
Gorilla gorilla ENSGGOG0000002674716 retrocopies
Myotis lucifugus ENSMLUG000000077642 retrocopies
Macaca mulatta ENSMMUG000000191183 retrocopies
Monodelphis domestica ENSMODG000000130422 retrocopies
Mustela putorius furoENSMPUG0000001643215 retrocopies
Otolemur garnettii ENSOGAG000000169321 retrocopy
Pongo abelii ENSPPYG0000001185814 retrocopies
Sarcophilus harrisii ENSSHAG000000003192 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000031651 retrocopy
Tursiops truncatus ENSTTRG00000011510 5 retrocopies



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